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Medical Microbiology, Virology, Immunology : textbook : Vol. 2.
Part III. SPECIAL MICROBIOLOGY
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Chapter 14. Microbiological and immunological diagnosis (E.A. Bogdanova)
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Table of contents
COMPOSITE AUTHORS
LIST OF ABBREVIATIONS
Part III. SPECIAL MICROBIOLOGY
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Chapter 14. Microbiological and immunological diagnosis (E.A. Bogdanova)
14.1. Characteristics of microbiological, virological and immunological laboratories
14.2. Equipment of microbiological and immunological laboratories
14.3. Safety rules in microbiological laboratory
14.4. Methods of microbiological diagnosis of infectious diseases
14.4.1. Methods of diagnosing bacterial infections
14.4.2. Methods of diagnosing viral infections
14.4.3. Special aspects of microbiological diagnosis of mycosis
14.4.4. Special aspects of microbiological diagnosis of protozoan infections
14.5. Collection, storage and transportation of material for research
Revision tasks (for self-control)
Chapter 15. Special bacteriology
15.1. Cocci (O.V. Bukharin)
15.1.1. Gram-positive aerobic cocci
Staphylococci (genus Staphylococcus)
Streptococci (genus Streptococcus)
Enterococci (genus Enterococcus)
15.1.2. Gram-negative aerobic cocci (genus Neisseria)
Meningococci
Gonococci
15.1.3. Anaerobic cocci
15.2. Gram-negative rod-shaped facultative anaerobes
15.2.1. Enterobacteria (family Enterobacteriaceae) (M.N. Boichenko)
Esherichia (genus Escherichia)
Klebsiella (genus Klebsiella)
Shigella (genus Shigella)
Salmonella (genus Salmonella)
Pathogens of typhoid and paratyphoid fever
Pathogen of plague (Yersinia pestis)
15.2.2. Vibrio (family Vibrionaceae)
Pathogen of cholera (Vibrio cholerae)
Aeromonas (genus Aeromonas)
15.2.3. Hemophilic bacteria (genus Haemophilus) (E.V. Budanova)
Haemophilus influenzae
Haemophilus influenzae biogroup aegyptius
Haemophilus ducreyi
Other bacterial species of the genus Haemophilus
15.3. Gram-negative aerobic rod-shaped bacteria
15.3.1. Bordetella (genus Bordetella) (E.V. Budanova)
15.3.2 Brucella (genus Brucella) (M.N. Boichenko)
15.3.3. Francisella (genus Francisella) (M.N. Boichenko)
15.3.4. Legionella (genus Legionella) (M.N. Boichenko)
15.3.5. Coxiella. Pathogen of Q-fever (Coxiella burnetii ) (M.N. Boichenko)
15.3.6. Bartonella (genus Bartonella) (M.N. Boichenko)
15.3.7. Aerobic non-fermentative gram-negative rod-shaped bacteria (E.V. Budanova)
Pseudomonas (genus Pseudomonas)
Burkholderia (genus Burkholderia)
15.4. Gram-negative anaerobic rod-shaped bacteria
15.4.1. General characteristics of gram-negative asporous anaerobic bacteria
15.4.2. Veillonella (genus Veillonela)
15.4.3. Bacteroides (genus Bacteroides), prevotella (genus Prevotella), porphyromonas (genus Porphyromonas)
15.4.4. Fusobacteria (genus Fusobacterium), Leptotrichia (genus Leptotrichia)
15.5. Sporous gram-positive rod-shaped bacteria
15.5.1. Bacillus anthracis (genus Bacillus) (M.N. Boichenko)
15.5.2. Sporous bacteria of the genus Clostridium (V.B. Sboychakov)
Pathogens of gas gangrene
Pathogen of tetanus (Clostridium tetani)
Pathogens of botulism (Clostridium botulinum)
Pathogens of pseudomembranous colitis (Clostridium difficili)
Microbiological diagnosis of clostridiosis
15.6. Gram-positive regular rod-shaped bacteria
15.6.1. Lactobacilli (genus Lactobacillus) (E.P. Pashkov)
15.6.2. Listeria (genus Listeria) (M.N. Boichenko)
15.7. Gram-positive irregularly shaped branching rods
15.7.1. Corynebacteria (genus Corynebacterium)(D.N. Nechaev, E.O. Kravtsova)
Pathogen of diphtheria (Corynebacterium diphtheriae)
Coryneform bacteria
15.7.2. Mycobacteria (family Mycobacteriaceae)
Pathogens of tuberculosis
Non-tuberculous mycobacteria (D.N. Nechaev, V.B. Sboychakov)
Leprosy pathogen (D.N. Nechaev)
15.7.3. Actinomycetes (genus Actinomyces) (E.O. Kravtsova)
15.7.4. Nocardia (genus Nocardia) (E.O. Kravtsova)
15.7.5. Bifidobacteria, eubacteria, propionibacteria, mobiluncus, gardnerella
Propionibacteria
Mobiluncus (genus Mobiluncus)
Gardnerella (genus Gardnerella)
15.8. Spirochaetes and other spiral bacteria
15.8.1. Treponema (genus Treponema) (V.B. Sboychakov, M.N. Boichenko)
Pathogen of syphilis (Treponema pallidum)
Other pathogenic treponema species and diseases caused by them
15.8.2. Borreliae (Borrelia) (M.N. Boichenko)
Pathogens of relapsing fever
Pathogens of lyme disease (B. burgdorferi, B. garini, B. afzelii)
15.8.3. Leptospira (genus Leptospira) (M.N. Boichenko)
15.8.4. Campylobacter (genus Campylobacter) (Yu.V. Nesvizhsky, M.N. Boichenko)
15.8.5. Helicobacter (genus Helicobacter) (Yu.V. Nesvizhsky)
15.9. Rickettsiae (family rickettsiaceae) (N.V. Rudakov, Yu.V. Nesvizhsky)
15.9.1. Family Rickettsiaceae
Representatives of genus Rickettsia
Pathogens of tsutsugamushi disease (genus Orìentía)
15.9.2. Pathogens of human anaplasmosis (family Anaplasmataceae)
15.10. Chlamydia (family Chlamydiaceae) (V.N. Tsarev, G.N. Usatova)
15.10.1. Pathogens of trachoma, conjunctivitis, urogenital chlamydia infection, etc. (С. trachomatis)
(С. trachomatis)
15.10.2. Pathogen of pneumonia (C. pneumoniae)
15.10.3. Pathogen of ornithosis
(С. psittaci )
15.11. Mycoplasma (family Mycoplasmataceae) (G.N. Usatova, V.N. Tsarev)
15.11.1. Pathogens of respiratory mycoplasmosis
15.11.2. Pathogens of urogenital mycoplasmosis and ureaplasmosis
Revision tasks (for self-control)
Chapter 16. Special virology
16.1. RNA-containing viruses
16.1.1. Picornaviruses (family Picomaviridae)
Enteroviruses
Rhinoviruses
Foot-and-mouth disease viruses
Hepatitis A virus
16.1.2. Reoviruses (family Reoviridae) (A.S. Bykov)
16.1.3. Bunyaviruses (family Bunyaviridae) (D.N. Nechaev)
Virus of Crimean-Congo hemorrhagic fever (CCHF)
Viruses causing hantavirus infections: hemorrhagic fever with renal syndrome (HFRS) and hantaviral pulmonary syndrome
16.1.4. Togaviruses (family Togaviridae) (V.V. Zverev, D.N. Nechaev)
Viruses of the genus Alphavirus
Rubella virus
16.1.5. Viruses of family Flaviviridae (V.V. Zverev, D.N. Nechaev)
Yellow fever virus
Tick-borne encephalitis virus
West Nile virus
16.1.6. Orthomyxoviruses (influenza viruses) (V.V. Zverev, L.I. Petrova)
16.1.7. Paramyxoviruses (family Paramyxoviridae) (A.S. Bykov)
Parainfluenza viruses
Epidemic parotitis virus
Virus of measles and subacute sclerosing panencephalitis
Human respiratory syncytial virus
16.1.8. Rhabdoviruses (Rhabdoviridae) (A.S. Bykov)
16.1.9. Filoviruses (family Filoviridae) (V.V. Zverev, L.I. Petrova)
16.1.10. Coronaviruses (family Coronaviridae)(V.V. Zverev, G.N. Usatova)
16.1.11. Human immunodeficiency virus (V.V. Zverev, M.N. Boichenko)
16.1.12. Arenaviruses (family Arenaviridae)(A.S. Bykov)
16.1.13. Hepatitis E virus (V.V. Zverev)
16.2. DNA-containing viruses
16.2.1. Adenoviruses (family Adenoviridae) (V.V. Zverev, L.I. Petrova)
16.2.2. Herpesviruses (Herpesviridae family) (V.V. Zverev, A.S. Bykov)
Herpes simplex virus
Varicella-zoster virus
Epstein-Barr virus
Cytomegalovirus
Human herpesviruses type 6, 7
and 8
16.2.3. Poxviruses (family Poxviridae) (A.S. Bykov)
Smallpox virus
Other human poxviruses
16.2.4. Hepadnaviruses (family Hepadnaviridae) (M.N. Boichenko)
16.3. Pathogens of parenteral viral hepatitis D, C, G (M.N. Boichenko)
16.3.1. Hepatitis D virus
16.3.2. Hepatitis C virus
16.3.3. Hepatitis G virus
16.4. Oncogenic viruses (M.N. Boichenko)
16.4.1. RNA-containing oncogenic viruses
16.4.2. DNA-containing oncogenic viruses
16.5. Slow viral infections and prion diseases (V.V. Zverev, A.S. Bykov)
Revision tasks (for self-control)
Chapter 17. Special mycology (A.S. Bykov)
17.1. Pathogens of superficial mycoses
17.2. Pathogens of epidermatomycosis
17.2.1. Pathogens of trichophytosis (genus Microsporum)
17.2.2. Pathogens of trichophytosis (genus Trichophyton)
17.2.3. Pathogen of favus (Trichophyton schoenleinii)
17.2.4. Pathogen of epidermophytosis inguinalis (Epidermophyton floccosum)
17.2.5. Pathogen of rubrophytosis (Trichophyton rubrum)
17.2.6. Pathogen of tinea pedis (Trichophyton interdigitale)
17.3. Pathogens of subcutaneous mycoses
17.3.1. Pathogen of sporotrichosis
17.3.2. Pathogens of chromoblastomycosis
17.3.3. Pathogens of pheohyphomycosis
17.3.4. Pathogens of mycetoma
17.4. Pathogens of systemic or deep mycoses
17.4.1. Coccidioidomycosis
17.4.2. Adiaspiromycosis
17.4.3. Histoplasmosis
17.4.4. Blastomycosis
17.4.5. Paracoccidioidomycosis
17.4.6. Cryptococcosis
17.5. Pathogens of opportunistic mycoses
17.5.1. Pathogens of candidiasis (genus Candida)
17.5.2. Pathogens of zygomycosis
17.5.3. Pathogens of aspergillosis (genus Aspergillus)
17.5.4. Pathogens of penicilliosis (genus Penicillium)
17.5.5. Pathogens of fusariosis (genus Fusarium)
17.5.6. Pathogen of pneumocystosis (Pneumocystis jiroveci)
17.5.7. Pathogens of microsporidiosis
17.6. Pathogens of mycotoxicoses
Chapter 18. Special protozoology (A.S. Bykov)
18.1. Sarcodina (amoebas)
18.2. Flagellates
18.2.1. Leishmania (genus Leichmania)
18.2.2. Trypanosomas (genus Trypanosoma)
18.2.3. Lamblia or giardia (genus Lamblia, Giardia)
18.2.4. Trichomonas (genus Trichomonas)
18.3.Sporozoa
18.3.1. Plasmodium malariae (genus Plasmodium)
18.3.2. Babesia (genus Babesia)
18.3.3. Toxoplasma (genus Toxoplasma)
18.3.4. Cryptosporidium (genus Cryptosporidium)
18.4. Ciliates
18.5. Blastocystis (genus blastocystis)
Revision tasks for self-control to chapter 17, 18
Chapter 19. Clinical microbiology (E.A. Bogdanova)
19.1. Concept of clinical microbiology
19.2. Role of opportunistic organisms in the development of infection
19.3. Diseases caused by opportunistic organisms. concept of opportunistic infection, its features
19.4. Methods of diagnosing opportunistic infection
19.5. Concept of nosocomial infection
Revision tasks (for self-control)
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